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NA-MIC Project Weeks

Welcome to the web page for the 41st Project Week!

This event will take place June 24th - June 28th, 2024 at MIT, Cambridge, MA. Project Week 41 will be a hybrid event with a strong in-person component. More details will be posted on this page as the event approaches. If you have any questions, you can contact the organizers.

Preparation meetings

We held weekly preparation meetings at 10am on Tuesdays on Zoom, starting April 30, 2024. The links will be sent by email.

Registration

Register at the link here.

Discord

The Discord application is used to communicate between team members and organize activities before and during Project Week. Please join the Project Week Discord server as soon as possible and explore its functionality before the workshop. For more information on the use of Discord before and during Project Week, please visit this page.

Agenda

How to add this calendar to your own?

Breakout sessions

Projects

To learn how to create or update project pages, please refer to the contributing project pages section.

The PW41_2024_MIT event has a total of 40 projects.

VR/AR and Rendering

  1. Visual Model for Respiratory Motion of Airways with SOFA-Slicer (In-person) (Quinn Williams, Steve Pieper)

IGT and Training

  1. Integration of Slicer and ROS (In-person) (Junichi Tokuda, Anton Deguet, Steve Pieper, Mariana Bernardes, Laura Connolly, Simon Leonard)

  2. AI-based ultrasound imaging simulator (In-person) (Junichi Tokuda, Xihan Ma, Simon Leonard, Laura Connolly, Haichong)

  3. Virtual plate placement for orbital surgery (In-person) (Chi Zhang, Braedon Gunn, Andrew Read-Fuller)

Segmentation / Classification / Landmarking

  1. BAMF nnUNet MRI Breast Model (Online) (Rahul Soni, Jithendra Kumar, Jeff Van Oss, Gowtham Murugesan)

  2. New Radiology and Pathology Deep Learning Models into MHub.ai (In-person) (Curtis Lisle, Leonard Nürnberg)

  3. VolumeAXI - Volume Analysis, Explanability and Interpretability on CBCT (In-person) (Jeanne Claret, Gaëlle Leroux, Lucia Cevidanes, Claudia Mattos, Juan Prieto)

  4. Segmentation verification module for finalizing multi-label AI segmentations (Online) (Csaba Pintér, Andrés Díaz Pinto, Dániel Palkovics)

  5. OMAS CT: Open Model for Anatomy Segmentation in Computer Tomography (In-person) (Tamaz Amiranashvili, Murong Xu, Bjoern Menze)

  6. Manual editing of FreeSurfer cortical surfaces (In-person) (Benoît Verreman, Jarrett Rushmore, Sylvain Bouix)

  7. Visual Evaluation and 3D Inspection of Cortical Surface Reconstructions from MRI Using 3D Slicer (Online) (Kaveh Moradkhani, Sylvain Bouix, Jarrett Rushmore)

  8. Terminologies for sulci and basal ganglia - epiSTIM 3D Slicer Extension (In-person) (Sara Fernandez Vidal, Valerio Frazzini)

  9. Automatic classification of MR scan sequence type (In-person) (Deepa Krishnaswamy, Cosmin Ciausu, Megha Kalia, Andrey Fedorov)

  10. Evaluation of subcortical segmentation results of Unest Model and creating a slicer module (Online) (Ghazal Danaee, Sylvain Bouix, Jarrett Rushmore)

  11. Integrate CPU friendly auto segmentation and CT utility models into mhub (In-person) (Suraj Pai, Leonard Nürnberg, Andriy Fedorov, Hugo Aerts)

  12. Evaluation of AI methods for MRI segmentation on IDC data (In-person) (Cosmin Ciausu, Deepa Krishnaswamy, Megha Kalia, Andrey Fedorov)

  13. Ultrasound extension (In-person) (Tamas Ungi, Tina Kapur, Amene Asgari, Mike Jin)

  14. Integrating ITMT Model into MHub.ai Platform (In-person) (Reza Mojahed-Yazdi)

  15. Slicer extension for shape analysis for dental applications using ShapeAXI module (In-person) (Lucie Dole, Florian Davaux, Claudia Trindade Mattos, Selene Barone, Felicia Miranda, Marcela Lima Gurgel, Juan Carlos Prieto, Lucia Cevidanes)

  16. Computer assisted vessel segmentation for 2D angiography (In-person) (Sarah Frisken)

  17. Integrate MRSegmentator and DeepSpA models into mhub.ai (In-person) (Felix Dorfner, Hartmut Häntze, Keno Bressem)

Quantification and Computation

  1. Spinal musculoskeletal module for computing vertebral-specific loading in daily tasks (In-person) (Ron Alkalay, Dennis Anderson, Vy Hong, Steve Pieper, Csaba Pinter)

  2. Multimodal Registration MR2CBCT (In-person) (Leroux Gaelle, Claret Jeanne, Cevidanes Lucia, Allemang David, Prieto Juan Carlos)

  3. Slicer Plugin for Detection of Motion Artifact on T1w MRI (In-person) (Charles Bricout, Sylvain Bouix, Owen Borders)

  4. Susceptibility distortion correction in diffusion MRI dataset (Online) (Sedigheh Dargahi, Sylvain Bouix)

  5. Using statistical shape modeling for improving 3D reconstruction of fetal ultrasound images (In-person) (Chi Zhang, Emet Schneiderman, Preetam Schramm, Zohre German, Ju-Ying Lin)

  6. T1w MRI Artifact Removal (In-person) (Owen Borders, Sylvain Bouix, Charles Bricout)

  7. Quality Control Model for Brain Surfaces (In-person) (Florian Davaux, Juan Carlos Prieto, Lucie Dole, Martin Styner)

  8. Finite element model preprocessing module for computing vertebral failure (In-person) (Ron Alkalay, Zahra Soltani, Steve Pieper, Csaba Pinter, Gnaneswar Chundi,)

Cloud / Web

  1. NCI Imaging Data Commons - user support and platform development (In-person) (Andrey Fedorov, Deepa Krishnaswamy, Vamsi Thiriveedhi, Cosmin Ciausu, Leonard Nuerenberg, Suraj Pai, Steve Pieper, Ron Kikinis, Michael Onken)

  2. Improve connectivity of Kaapana to IDCProject (In-person) (Vamsi Thiriveedhi, Mikulas Bankovic, Andrey Fedorov)

Infrastructure

  1. MHub Contributors (In-person) (Leonard Nürnberg, Andriy Fedorov, Hugo Aerts)

  2. MorphoDepot: Collaborative segmentation projects (In-person) (Steve Pieper, Murat Maga)

  3. Enabling PyTorch3D on Windows and Optimizing Miniconda for Slicer Extensions (In-person) (Leroux Gaelle, Claret Jeanne, Cevidanes Lucia, Hutin Nathan, Allemand David, Prieto Juan Carlos)

  4. 3DSlicerForLatinAmerica (Online) (Sonia Pujol, Luiz Murta, Douglas Samuel Gonçalves, Lucas Sanchez Silva, Paulo Eduardo de Barros Veiga, Adriana Herlinda Vilchis González, Enrique Hernández Laredo, Victor Manuel Montaño Serrano, Monserrat Ríos-Hernández, Juan Carlos Avila Vilchis, Vianney Muñoz Jiménez, Mariana Alvarez-Carvajal, Valeria Gómez Valdes)

  5. Updated Icons and Theme switching (In-person) (Sam Horvath, Wendy Plesniak)

  6. Simple Editor for Python Scripting (Online) (Oshane Thomas, Murat Maga, Steve Pieper)

  7. Risk Prediction Deep Learning Models into MHub.ai (In-person) (Ahmed Adly, Leonard Nuernberg, Hugo Aerts)

  8. Slicer-SOFA (In-person) (Rafael Palomar, Paul Baksic, Steve Pieper, Andras Lasso, Jean-Christophe Fillion-Robin, Sam Horvath, Naomi Catwell, Chi Zhang, Ron Alkalay, Quinn Williams)

  9. 3D Slicer Internationalization (In-person and Online) (Sonia Pujol, PhD, Person2 Doe2)

Uncategorized

This section lists projects that either have no category assigned, are assigned to the “Uncategorized” category, or are assigned to a different category than the ones listed above. If you are unable to find a category that is suitable for your project, or believe that a specific category is missing, please discuss it with the organizers.

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your registration.

List of registered participants so far (names will be added here after processing registrations):

Updated on 2024-06-20.

  1. Ekaterina Akhmad, Maastricht University, Netherlands, Virtual
  2. Ron Alkalay, Beth Israel Deaconess Medical Center, USA, In Person
  3. Tamaz Amiranashvili, University of Zurich, Switzerland, In Person
  4. Dennis Anderson, Beth Israel Deaconess Medical Center, USA, In Person
  5. Theodore Aptekarev, Slicer Community, Montenegro, Virtual
  6. Amene Asgari, Brigham and women’s hospital, USA, In Person
  7. Imre János Barabás, Semmelweis University, Hungary, In Person
  8. Owen Borders, Massachusetts General Hospital, USA, In Person
  9. Sylvain Bouix, École de technologie supérieure, Canada, In Person
  10. Charles Bricout, ETS, Canada, In Person
  11. Mamadou Samba CAMARA, Université Cheikh Anta Diop de Dakar, Senegal, Virtual
  12. Naomi Catwell, ÉTS, Canada, Virtual
  13. Mirela Cazzolato, University of Sao Paulo, Brazil, Virtual
  14. Lucia Cevidanes, University of Michigan, USA, Virtual
  15. Cosmin Ciausu, Brigham and Women’s Hospital, USA, In Person
  16. Jeanne Claret, University of Michigan, USA, In Person
  17. David Clunie, PixelMed, USA, Virtual
  18. Carole-Anne COS, Paris Brain Institute, France, Virtual
  19. Mariana Costa Bernardes Matias, Brigham and Women’s Hospital, USA, In Person
  20. Ghazal Danaee, École de technologie supérieure( ÉTS), Canada, Virtual
  21. sedigheh dargahi, École de technologie supérieure, Canada, Virtual
  22. Florian Davaux, Unaffiliated, , In Person
  23. Paulo Eduardo de Barros Veiga, Universidade de São Paulo, Brazil, Virtual
  24. Anton Deguet, Johns Hopkins University, USA, In Person
  25. Chayanika Devi, University of Cincinnati, USA, Virtual
  26. Mouhamed DIOP, Cheikh Anta Diop University of Dakar, Senegal, Virtual
  27. Lucie Dole, Unaffiliated, , In Person
  28. Reuben Dorent, Brigham and Women’s Hospital, USA, In Person
  29. Felix Dorfner, Massachusetts General Hospital and Charité - Universitätsmedizin Berlin, USA, In Person
  30. Simon Drouin, École de technologie supérieure, Canada, In Person
  31. Moumen El-Melegy, Assiut University, Brigham and Women’s Hospital, USA, In Person
  32. Andrey Fedorov, Brigham and Women’s Hospital, USA, In Person
  33. sara Fernandez Vidal, PARIS BRAIN INSTITUTE, France, In Person
  34. Jean-Christophe Fillion-Robin, Kitware, USA, In Person
  35. Sarah Frisken, Brigham and Women’s Hospital, USA, In Person
  36. Colin Galvin, Brigham and Women’s Hospital, USA, In Person
  37. Douglas Samuel Gonçalves, USP, Brazil, Virtual
  38. Martin Gregorio, ICM, France, Virtual
  39. Michael Halle, Open Anatomy Project, USA, In Person
  40. Ahmed Hassan, Harvard Medical School, Netherlands, In Person
  41. Carl Haugg, Harvard Medical School, USA, In Person
  42. Enrique Hernandez-Laredo, Universidad Autónoma del Estado de México, Mexico, Virtual
  43. Samantha Horvath, Kitware Inc, USA, In Person
  44. Bing-Xing Huo, Broad Institute, USA, Virtual
  45. Mike Jin, Brigham and Women’s Hospital; Centaur Labs, USA, In Person
  46. JANGRAE JO, University of Massachusetts, USA, Virtual
  47. Megha Kalia, Brigham and Womens, USA, In Person
  48. Tina Kapur, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  49. Ron Kikinis, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  50. Deepa Krishnaswamy, Brigham and Women’s Hospital, USA, In Person
  51. Andras Lasso, Queen’s University, Canada, In Person
  52. kyuheon lee, korea university, Republic of Korea, Virtual
  53. Gaelle Leroux, University of Michigan, USA, In Person
  54. Rui Li, New York University, USA, Virtual
  55. Curtis Lisle, KnowledgeVis, LLC, USA, In Person
  56. Xihan Ma, Worcester Polytechnic Institute, USA, In Person
  57. Murat Maga, Seattle Childrens Research Institute, USA, Virtual
  58. Katie Mastrogiacomo, Brigham and Women’s Hospital, USA, In Person
  59. Bjoern Menze, University of Zurich, Switzerland, In Person
  60. Moaid Mohamedosman, Unaffiliated, Egypt, Virtual
  61. Reza Mojahed-Yazdi, AIM Lab, Brigham and Women Hospital, USA, In Person
  62. Victor Manuel Montaño Serrano, Universidad Autónoma del Estado de México, Mexico, Virtual
  63. Kaveh Moradkhani, École de technologie supérieure ÉTS, Canada, Virtual
  64. Luiz Murta, University of São Paulo, Brazil, Virtual
  65. Leonard Nürnberg, MGB / Harvard, Netherlands, In Person
  66. Ballambat Suraj Pai, Brigham and Womens Hospital, USA, In Person
  67. Rafael Palomar, Oslo University Hospital, Norway, In Person
  68. Umang Pandey, Clinica Universidad de Navarra, Madrid, Spain, Virtual
  69. Tae Young Park, KIST, Republic of Korea, Virtual
  70. Sam Pathak, NCI, USA, Virtual
  71. Steve Pieper, Isomics, Inc., USA, In Person
  72. Csaba Pinter, EBATINCA, Spain, Virtual
  73. Juan Prieto, University of North Carolina, USA, In Person
  74. Sonia Pujol, Brigham and Women’s Hospital, Harvard Medical School, USA, In Person
  75. Aneesh Rangnekar, Memorial Sloan Kettering Cancer Center, USA, Virtual
  76. Monserrat Ríos-Hernández, Universidad Autónoma del Estado de México, Mexico, Virtual
  77. Sara Rolfe, Seattle Children’s Research Institute, USA, In Person
  78. Jarrett Rushmore, Boston University School of Medicine, USA, In Person
  79. Divya Sain, Velsera, USA, Virtual
  80. Lucas Sanchez Silva, Universidade de São Paulo, Brazil, Virtual
  81. Leonardo Seoane, Ochsner Health System, USA, In Person
  82. Kyle Sunderland, Queen’s University, Canada, In Person
  83. Baye Balla SY, Military Health School of Dakar, Senegal, Virtual
  84. Attila Tanács, University of Szeged, Hungary, Virtual
  85. Jess Tate, University of Utah, USA, Virtual
  86. Pape mady Thiao, EMS, Senegal, Virtual
  87. Pape mady Thiao, Unaffiliated, , Virtual
  88. Vamsi Thiriveedhi, Brigham and Women’s Hospital, USA, In Person
  89. Oshane Thomas, Seattle Children’s Research Institute, USA, Virtual
  90. Junichi Tokuda, Brigham and Women’s Hospital, USA, In Person
  91. Tamas Ungi, Queen’s University, Canada, In Person
  92. Jeff VanOss, BAMF Health, USA, Virtual
  93. Benoit Verreman, ÉTS, Canada, In Person
  94. Adriana H. Vilchis González, Facultad de Ingeniería- Facultad de Medicina _UAEMéx, Mexico, Virtual
  95. William Wells, BWH, USA, In Person
  96. Quinn Williams, Brigham and Women’s Hospital, USA, In Person
  97. Murong Xu, Univerisity of Zurich, Switzerland, In Person
  98. Chi Zhang, Texas A&M University School of Dentistry, USA, In Person

Statistics

Organizers

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.