NA-MIC Project Weeks

Welcome to the web page for the 37th Project Week!

This event took place from June 27 to July 1, 2022.

If you have any questions, you can contact the organizers.

Please fill out the post-Project Week survey to let us know what you thought of this edition. Hope to see you again for Project Week 38 in Las Palmas, Jan 30-Feb 3rd 2023!

Screenshots, Illustrations & Photos Album

Google Photos album

Before Project Week

1. Participants met at preparation meetings to present projects they intended to work on at PW, seeking collaborators or to join one of the projects proposed by others.
2. Participants joined the Discord server and used to communicate during Project Week. Go to this page for more info on the use of Discord during PW.
3. A workshop on using MONAI Label with 3D Slicer was held June 22, 2022 from 9-11am EDT. See this page to for more information.

During Project Week (All times US Eastern Daylight (Boston) Time)

• Initial project presentations started at 9am on Zoom, on Zoom. Each team delegated a member to present their projects in no more than 2 minutes using no other visual support than the project page on GitHub (no time to switch screen sharing)
• Participants who did not have a project, could find a project they were interested in and contacted team members through their Discord channel.
• Breakout sessions start every day at 9am on Zoom (links in the calendar below)
• Work in project teams happened throughout the week with communication between team members taking place on Discord.
• The week ended with project results presentation (9am on Friday). Again, each team delegated one member to present their results in a maximum of 2 minutes. The project page was used as a visual support for the presentation.

Agenda

How to add this calendar to your own?

Projects (How to add a new project?)

VR/AR and Rendering

1. PRISM Rendering (Simon Drouin, Steve Pieper, Andrey Titov, Rafael Palomar)
2. SlicerVR infrastructure (Csaba Pinter, Sankhesh Jhaveri, David Garcia Mato, Adam Rankin, Jean-Christophe Fillion-Robin) )
3. SlicerVR Tutorial (Monica Garcia-Sevilla, David Garcia-Mato, Csaba Pinter, ?)
4. Slicer Photogrammetry (Chi Zhang, Murat Maga, Steve Pieper)
5. Cinematic Rendering VTK PBR (Shreeraj Jadhav, Jiayi Xu, Jean-Christophe Fillion-Robin)
6. Slicer TMS Module (Loraine Franke, Jax Luo, Raymond Yang, Steve Pieper, Lipeng Ning, Daniel Haehn)
7. SlicerWGPU - WebGPU in Slicer (Steve Pieper)

Image-guided therapy (IGT) and low-cost systems

1. Slicer-Liver (Rafael Palomar, Gabriella D’Albenzio, Ruoyan Meng, Ole V. Solberg, Geir A. Tangen, Javier Pérez de Frutos)
2. Low-Cost Ultrasound Training (David Garcia-Mato, Csaba Pinter, Rebecca Hisey, Matthew Holden,…)
3. Virtual endoscopy (Yi Gao)
4. SlicerTMS: Deep learning for E-field prediction(Jax Luo, Loraine Franke, Raymond Yang, Steve Pieper, Daniel Haehn, Lipeng Ning)

Segmentation/Classification

1. Lung segmentation with MONAILabel (Rudolf Bumm, Andres Diaz-Pinto)
2. Lumbar spine segmentation using MONAILabel (Nayra Pumar, María Rosa Rodriguez, David García Mato)
3. Combined MONAI Label and MONAI Deploy SDK Applications (Erik Ziegler, Roya Khajavi, Steve Pieper, Ron Kikinis, Andres Diaz-Pinto)
4. AMASSS CBCT (Maxime Gillot, Baptiste Baquero,Lucia Cevidanes, Juan Prieto)
5. CT Lymph Node collection weakly annotated MONAI Label (Roya Khajavi, Erik Ziegler, Steve Pieper, Ron Kikinis)
6. SlicerHeart polar maps (Connor Haberl)
7. IDC Prostate Segmentation (Cosmin Ciausu, Andrey Fedorov)
8. Outlier Detection of Large Scale Mammography Studies (Pablo Bendiksen, Ryan Zurrin, Neha Goyal, Daniel Haehn)
9. Streamlined ROI Annotation Tool (Ryan Zurrin, Neha Goyal, Pablo Bendiksen, Kendrick Kheav, Daniel Haehn)
10. Mass spectomatry imaging using Slicer (Parvin Mousavi, Amoon Jamzad, Jessica Rodgers, Mackenzie Sharp, Hanad Elmi)
11. Multi-stage dental segmentation (Daniel Palkovics, Csaba Pinter, David Garcia Mato, Andres Diaz-Pinto)
12. Automatic Landmark Identification (Maxime Gillot, Baptiste Baquero,Lucia Cevidanes, Juan Prieto)

Quantification

1. AQ3DC (Baptiste Baquero, Maxime Gillot, Lucia Cevidanes)
2. Multichannel image colocalization statistics (Xiang Chen, Oscar Meruvia-Pastor, Touati Benoukraf)
3. Poisson Shape Analysis (Yi Gao)
4. SlicerScope - whole slide histopathology (Yi Gao, Steve Pieper)

Cloud

1. Imaging Data Commons (Andrey Fedorov, Deepa Krishnaswamy, Dennis Bontempi, Cosmin Ciausu, Steve Pieper, Ron Kikinis)
2. mpReview (Deepa Krishnaswamy, Andrey Fedorov)
3. Slice level annotations in OHIF (Deepa Krishnaswamy, Davide Punzo, Markus Herrmann, Chris Bridge, Andrey Fedorov)

Infrastructure

1. SystoleOS: (Rafael Palomar, Andras Lasso, Steve Pieper, Jean-Christophe Fillion-Robin, Sam Horvath)
2. MarkupConstraints (David Allemang, Jean-Christophe Fillion-Robin)
3. SlicerInternationalization (Sonia Pujol, Steve Pieper, Andras Lasso)
4. Slicer Batch Annonymize(Hina Shah, Juan Carolos Prieto)
5. Slicer 5++: (Sam Horvath, Andras Lasso, Steve Pieper, Jean-Christophe Fillion-Robin)
6. EquivalentRotationSliders: (Mauro Dominguez, …)

Registrants

List of registered participants:

1. Tina Kapur, Brigham and Women’s Hospital and Harvard Medical School, USA
2. David Garcia-Mato, Ebatinca SL, Spain
3. Steve Pieper, Isomics, Inc., USA
4. Andrey Fedorov, Brigham and Women’s Hospital, USA
5. Adama Rama WADE, Cheikh Anta Diop University, Senegal
6. Deepa Krishnaswamy, Brigham and Women’s Hospital, USA
7. Simon Drouin, École de Technologie Supérieure, Canada
8. Roya Khajavibajestani, BWH, USA
9. RON KIKINIS, SPL, USA
10. Sonia Pujol, Brigham and Women’s Hospital, Harvard Medical School, USA
11. Jax LUO, BWH, USA
12. Li Zhenzhu, Hwa Mei Hospital, China
13. Ole Vegard Solberg, SINTEF, Norway
14. Mauro Ignacio Dominguez, Independant, Argentina
15. Lucia Cevidanes, University of Michigan, USA
16. YAHYA TFEIL, UNIVERSITY NOUAKCHOTT ALAASRIYA, Mauritania
17. Rafael Palomar, Oslo University Hospital and NTNU, Norway
18. Pape Mady THIAO , École militaire de santé de Dakar, Senegal
19. Mónica García-Sevilla, Universidad de Las Palmas de Gran Canaria, Spain
20. Badiaa AIT AHMED , Universidad de Las Palmas de Gran Canaria, Spain
21. Cosmin Ciausu, Brigham and Women’s Hospital, USA
22. Michael Dada, Federal University of Technology, Minna, Nigeria
23. Shiraz Yousif Abd Elsalam Yousif, University of Khartoum , Australia
24. Geir Arne Tangen, SINTEF, Norway
25. Marie NDIAYE, Université Assane Seck de Ziguinchor, Senegal
26. Ron Alkalay, Beth Israel Deaconess Medical Center, USA
27. Csaba Pintér, EBATINCA S.L., Spain
28. Samantha Horvath, Kitware, USA
29. Rebecca Hisey, Queen’s University, Canada
30. Connor Haberl, University of Ottawa Heart Institute, Canada
31. Gang Fu, Amazon, USA
32. Shreeraj Jadhav, Kitware, Inc., USA
33. Eve LoCastro, Memorial Sloan Kettering, USA
34. Srivathsan Shanmuganathan, University of Alberta, Canada
35. David Allemang, Kitware Inc., USA
36. Michel David Raed, University of São Paulo, Brazil
37. Jiayi Xu, Kitware, USA
38. Gabriella d’ Albezio, The Intervention Center (OUS), Norway
39. HINA SHAH, UNC Chapel Hill, USA
40. Sharanya Balachandran, University of Alberta, Canada
41. Muhammad zubair islam, Sejong University, Seoul, South Korea, South Korea
42. Daniel Haehn, University of Massachusetts Boston, USA
43. Sankhesh Jhaveri, Kitware, Inc., USA
44. li, hospital, China
45. Nayra Pumar, Ebatinca, Spain
46. Ruoyan Meng, Norwegian University of Science and Technology, Norway
47. Loraine Franke, University of Massachusetts Boston, USA
48. Javier, SINTEF, Norway
49. Chi Zhang, Seattle Children’s Research Institute, USA
50. Nadya Shusharina, Massachusetts General Hospital, USA
51. Ahmedou Moulaye Idriss, Faculty of Medicine / University of Nouakchott Al Asriya , USA
52. Ryan Zurrin, University of Massachusetts Boston, USA
53. NANTENAINA Tina, ETS Montreal, Canada
54. Daniel Palkovics, Semmelweis University, Hungary
55. Matthew Holden, Carleton University, Canada
56. Pedro Moreira, Brigham and Women’s Hospital, USA
57. Oumaima Saoud, ENIM, Morocco
58. Neha Goyal, University of Massachusetts Boston , USA
59. Ibtissam MEDARHRI, ENSMR, Morocco
60. Andras Lasso, PerkLab, Queen’s University, Canada
61. Maxime Gillot, University of Michigan, USA
62. Baptiste Baquero , University of Michigan, USA
63. Gurnish Sidora, University of Toronto, Canada
64. Pablo Bendiksen, University of Massachusetts Boston, USA
65. Mariana Costa Bernardes Matias, Brigham and Women’s Hospital, USA
66. Oumar SY, Cheikh Anta Diop University , Senegal
67. said, ENSMR, Morocco
68. Luiz Murta, University of São Paulo, Brazil
69. Mamadou Camara, Cheikh Anta Diop University of Dakar, Senegal
70. Mohamed Alalli BILAL, Ecole Supérieure polytechnique , Senegal
71. Patrick Remerscheid, Technical University of Munich, Germany
72. Khaled Younis, Philips, USA
73. Nicolas Yanez, Philips, USA
74. Renjie He, MDACC, USA
75. Hanad Elmi, Queen’s University, Canada
76. Lukas Riedersberger, dev-threads, Germany
77. Johannes Pieger, dev-threads, Germany
78. Luca Boretto, University of Oslo, Norway
79. jiazeyu, None, China
80. Jean-Christophe Fillion-Robin, Kitware, USA
81. Yi Gao, Shenzhen University, China
82. Adriana H. Vilchis González, Universidad Autónoma del Estado de México, Mexico
83. Tamas Ungi, Queen’s University, Canada
84. Kendrick Kheav, University of Massachusetts Boston, USA
85. Juan Carlos Avila Vilchis, Universidad Autónoma del Estado de México, Mexico
86. Xiang Chen, Memorial University of Newfoundland, Canada
87. Leah Groves, Queen’s University , Canada
88. Lipeng Ning, Brigham and Women’s Hospital, USA
89. Vianney Muñoz-Jiménez, Universidad Autónoma del Estado de México, Mexico
90. Mariana Alvarez-Carvajal, Universidad Autonoma del Estado de Mexico, Mexico
91. Michael Dada, Federal University of Technology, Minna, Nigeria
92. Joaquin Olivares, University of Cordoba, Spain
93. Étienne Léger, Brigham and Women’s Hospital, USA
94. Samuelle St-Onge, École de technologie supérieure (ÉTS), Canada
95. Kyle Sunderland, Queen’s University, Canada
96. NIrav Patel, Indian Institute of Technology Madras, India
97. Inés, Universidad Carlos III de Madrid, Spain
98. Dženan Zukić, Kitware, USA
99. María Rosa, Universidad de Las Palmas de Gran Canaria, Spain
100. Davit Aghayan, Oslo University Hospital, Norway
101. Kristof Moga, Perklab, Canada
102. Theodore Aptekarev, Slicer Community, Montenegro
103. Garth Macey, University of Wisconsin - Platteville, USA
104. Erik Ziegler, Open Health Imaging Foundation, Netherlands
105. Mouhamed DIOP, Cheikh Anta Diop University of Dakar, Senegal
106. Felicia Miranda, School of Dentistry, University of Michigan, USA
107. Christian Herz, Children’s Hospital of Philadelphia, USA
108. Laura Connolly, Queen’s University, Canada
109. Richard Doerer, Michigan State Univ, Yale Univ, USA
110. Mauro I. Dominguez, -, Argentina
111. Vinicius Pavanelli Vianna, University of Sao Paulo - CSIM, Brazil
112. Fatih, inonu university, Turkey
113. Matt McCormick, Kitware, USA
114. Adam Rankin, Robarts Research Institute, Canada
115. Pranjal Sahu, Stony Brook University, USA
116. Dada Michael, Federal University of Technology, Minna, Nigeria
117. Jasper van der Zee, University of Twente, Netherlands

Statistics

• 117 Registered attendees
  • 41% first time attendees
• 20 countries
• 36 projects

History

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.